DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: "Winged helix" DNA-binding domain.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|255532386|ref|YP_003092758.1| External link p5 SF
  p5 PF
gi|163850220|ref|YP_001638263.1| External link 6r SF
  6r PF
gi|110637540|ref|YP_677747.1| External link 37 SF
  37 PF
gi|42525586|ref|NP_970684.1| External link td SF
  td PF
gi|16762818|ref|NP_458435.1| External link ty SF
  ty PF
jgi|Poptr1_1|596398|eugene3.08260001 External link pt SF
  pt PF
gi|29349746|ref|NP_813249.1| External link bt SF
  bt PF
gi|124385316|ref|YP_001028159.1| External link 38 SF
  38 PF
gi|62181970|ref|YP_218387.1| External link x6 SF
  x6 PF
gi|184157481|ref|YP_001845820.1| External link 99 SF
  99 PF
gi|190576129|ref|YP_001973974.1| External link 9i SF
  9i PF
gi|120601750|ref|YP_966150.1| External link 0t SF
  0t PF
gi|91776087|ref|YP_545843.1| External link m7 SF
  m7 PF
gi|161620484|ref|YP_001594370.1| External link 6z SF
  6z PF
gi|58336871|ref|YP_193456.1| External link lt SF
  lt PF
gi|53713437|ref|YP_099429.1| External link fa SF
  fa PF
jgi|Nemve1|223991|fgenesh1_pg.scaffold_3690000001 External link nw SF
  nw PF
gi|56478360|ref|YP_159949.1| External link az SF
  az PF
gi|116629629|ref|YP_814801.1| External link 13 SF
  13 PF
gi|15806020|ref|NP_294721.1| External link dr SF
  dr PF
gi|148255642|ref|YP_001240227.1| External link 42 SF
  42 PF
gi|50084448|ref|YP_045958.1| External link ab SF
  ab PF
gi|49487410|ref|YP_044631.1| External link ar SF
  ar PF
gi|170751159|ref|YP_001757419.1| External link 7w SF
  7w PF
gi|13473182|ref|NP_104749.1| External link mk SF
  mk PF
gi|120556455|ref|YP_960806.1| External link 1n SF
  1n PF
gi|91976220|ref|YP_568879.1| External link rr SF
  rr PF
gi|92116466|ref|YP_576195.1| External link nb SF
  nb PF
gi|171057939|ref|YP_001790288.1| External link 7i SF
  7i PF
gi|148661472|ref|YP_001282995.1| External link 4q SF
  4q PF
gi|86357030|ref|YP_468922.1| External link rz SF
  rz PF
gi|170082875|ref|YP_001732195.1| External link 8n SF
  8n PF
gi|81300052|ref|YP_400260.1| External link sn SF
  sn PF
gi|170751169|ref|YP_001757429.1| External link 7w SF
  7w PF
gi|77464852|ref|YP_354356.1| External link rh SF
  rh PF
gi|16766754|ref|NP_462369.1| External link su SF
Gene name: crp  su PF
gi|170742178|ref|YP_001770833.1| External link 7s SF
  7s PF
gi|170761124|ref|YP_001786726.1| External link 8s SF
  8s PF
gi|59712887|ref|YP_205663.1| External link vf SF
  vf PF
gi|15642609|ref|NP_232242.1| External link vc SF
  vc PF
gi|34498442|ref|NP_902657.1| External link vi SF
  vi PF
gi|116620437|ref|YP_822593.1| External link 25 SF
  25 PF
gi|74318611|ref|YP_316351.1| External link nt SF
  nt PF
gi|184157839|ref|YP_001846178.1| External link 99 SF
  99 PF
gi|42519570|ref|NP_965500.1| External link lj SF
  lj PF
gi|108814052|ref|YP_649819.1| External link yn SF
  yn PF
gi|187933066|ref|YP_001884906.1| External link 97 SF
  97 PF
gi|126463694|ref|YP_001044808.1| External link 21 SF
  21 PF
gi|121598534|ref|YP_993699.1| External link 1m SF
  1m PF
gi|194735165|ref|YP_002116409.1| External link d8 SF
  d8 PF