DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: C-terminal effector domain of the bipartite response regulators.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|50119067|ref|YP_048234.1| External link er SF
  er PF
gi|30063360|ref|NP_837531.1| External link fs SF
  fs PF
gi|110805889|ref|YP_689409.1| External link 3s SF
  3s PF
gi|91780463|ref|YP_555670.1| External link b4 SF
  b4 PF
gi|116691305|ref|YP_836838.1| External link 5l SF
  5l PF
gi|86747308|ref|YP_483804.1| External link rj SF
  rj PF
gi|120401038|ref|YP_950867.1| External link 28 SF
  28 PF
gi|154252801|ref|YP_001413625.1| External link 1e SF
  1e PF
gi|107027298|ref|YP_624809.1| External link b6 SF
  b6 PF
gi|89054524|ref|YP_509975.1| External link ja SF
  ja PF
gi|21225224|ref|NP_631003.1| External link sf SF
  sf PF
gi|21283679|ref|NP_646767.1| External link s1 SF
  s1 PF No hits
gi|88195923|ref|YP_500734.1| External link aq SF
  aq PF No hits
gi|161510240|ref|YP_001575899.1| External link 6o SF
  6o PF No hits
gi|49486823|ref|YP_044044.1| External link ar SF
  ar PF No hits
gi|32473870|ref|NP_866864.1| External link pi SF
  pi PF No hits
gi|27380290|ref|NP_771819.1| External link bj SF
  bj PF