DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: C-terminal effector domain of the bipartite response regulators.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|117928949|ref|YP_873500.1| External link 3q SF
  3q PF
gi|126432866|ref|YP_001068557.1| External link 22 SF
  22 PF
gi|108797243|ref|YP_637440.1| External link yb SF
  yb PF
gi|15839642|ref|NP_334679.1| External link mu SF
  mu PF
gi|111220810|ref|YP_711604.1| External link 1b SF
  1b PF
gi|145596382|ref|YP_001160679.1| External link 1h SF
  1h PF
gi|54026532|ref|YP_120774.1| External link nf SF
  nf PF
gi|21221403|ref|NP_627182.1| External link sf SF
  sf PF
gi|86739506|ref|YP_479906.1| External link fk SF
  fk PF
gi|145220984|ref|YP_001131662.1| External link 4h SF
  4h PF
gi|111023331|ref|YP_706303.1| External link 3r SF
  3r PF
gi|118616899|ref|YP_905231.1| External link 5o SF
  5o PF
gi|148660025|ref|YP_001281548.1| External link 4q SF
  4q PF
gi|31791438|ref|NP_853931.1| External link mc SF
  mc PF
gi|120401327|ref|YP_951156.1| External link 28 SF
  28 PF
gi|169630601|ref|YP_001704250.1| External link 8c SF
  8c PF
gi|118464556|ref|YP_884021.1| External link 59 SF
  59 PF
gi|134100339|ref|YP_001106000.1| External link 18 SF
  18 PF
gi|148821455|ref|YP_001286209.1| External link 51 SF
  51 PF
gi|41409804|ref|NP_962640.1| External link av SF
  av PF
gi|119714620|ref|YP_921585.1| External link 0j SF
  0j PF
gi|182438369|ref|YP_001826088.1| External link 7n SF
  7n PF
gi|183980548|ref|YP_001848839.1| External link 8u SF
  8u PF
gi|121636173|ref|YP_976396.1| External link 07 SF
  07 PF
gi|119866328|ref|YP_936280.1| External link 46 SF
  46 PF
gi|15607401|ref|NP_214774.1| External link mb SF
  mb PF
gi|29831663|ref|NP_826297.1| External link s9 SF
  s9 PF
gi|109900068|ref|YP_663323.1| External link px SF
  px PF
gi|94971260|ref|YP_593308.1| External link a3 SF
  a3 PF
gi|148656477|ref|YP_001276682.1| External link 4a SF
  4a PF
gi|116622336|ref|YP_824492.1| External link 25 SF
  25 PF
gi|148657949|ref|YP_001278154.1| External link 4a SF
  4a PF
gi|148654334|ref|YP_001274539.1| External link 4a SF
  4a PF
29928.m000539 External link rk SF
  rk PF
gi|186683314|ref|YP_001866510.1| External link 9j SF
  9j PF
gi|49185859|ref|YP_029111.1| External link b0 SF
  b0 PF
gi|145594240|ref|YP_001158537.1| External link 1h SF
  1h PF
gi|116672198|ref|YP_833131.1| External link 1f SF
  1f PF
gi|156742755|ref|YP_001432884.1| External link 77 SF
  77 PF
gi|114563321|ref|YP_750834.1| External link 3w SF
  3w PF
gi|163846536|ref|YP_001634580.1| External link 6w SF
  6w PF
gi|84624539|ref|YP_451911.1| External link xz SF
  xz PF
gi|119870631|ref|YP_940583.1| External link 46 SF
  46 PF
gi|114564828|ref|YP_752342.1| External link 3w SF
  3w PF
gi|16077269|ref|NP_388082.1| External link bs SF
Gene name: ybdJ  bs PF
gi|163940784|ref|YP_001645668.1| External link 62 SF
  62 PF
gi|94308972|ref|YP_582182.1| External link r4 SF
  r4 PF
gi|159037318|ref|YP_001536571.1| External link 61 SF
  61 PF
gi|150003409|ref|YP_001298153.1| External link 0r SF
  0r PF
gi|126443848|ref|YP_001063115.1| External link 36 SF
  36 PF