DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: Regulatory protein AraC.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
jgi|Poptr1_1|294799|gw1.70.252.1 External link pt SF
  pt PF
gi|60681617|ref|YP_211761.1| External link fl SF
  fl PF
jgi|Monbr1|38713|estExt_fgenesh1_pg.C_300039 External link ov SF
  ov PF
jgi|Phypa1_1|103605|fgenesh1_pg.scaffold_3303000002 External link pw SF
  pw PF
82542.m00014 External link tx SF
  tx PF
gi|29346803|ref|NP_810306.1| External link bt SF
  bt PF
gi|171058826|ref|YP_001791175.1| External link 7i SF
  7i PF
jgi|Monbr1|32951|estExt_fgenesh2_pg.C_140216 External link ov SF
  ov PF
jgi|Auran1|65958 External link a6 SF
  a6 PF
jgi|Monbr1|12796|fgenesh1_pg.scaffold_46000006 External link ov SF
  ov PF
jgi|Monbr1|11172|fgenesh1_pg.scaffold_26000135 External link ov SF
  ov PF
gi|160901206|ref|YP_001566788.1| External link 7d SF
  7d PF
gi|56751765|ref|YP_172466.1| External link x3 SF
  x3 PF No hits
gi|81301156|ref|YP_401364.1| External link sn SF
  sn PF No hits
jgi|Phypa1_1|103538|fgenesh1_pg.scaffold_2909000002 External link pw SF
  pw PF
gi|169826294|ref|YP_001696452.1| External link 7z SF
  7z PF
gi|110803556|ref|YP_698751.1| External link 5n SF
  5n PF
gi|110800462|ref|YP_696136.1| External link 2f SF
  2f PF
gi|18310427|ref|NP_562361.1| External link cu SF
  cu PF No hits
gi|187935476|ref|YP_001884892.1| External link 97 SF
  97 PF
gi|82749817|ref|YP_415558.1| External link sk SF
  sk PF
gi|15925805|ref|NP_373338.1| External link s2 SF
  s2 PF
gi|21281806|ref|NP_644892.1| External link s1 SF
  s1 PF
gi|15923091|ref|NP_370625.1| External link sa SF
  sa PF
gi|161508370|ref|YP_001574029.1| External link 6o SF
  6o PF
gi|87161751|ref|YP_492821.1| External link a2 SF
  a2 PF
gi|49484981|ref|YP_042202.1| External link ar SF
  ar PF
gi|88193876|ref|YP_498661.1| External link aq SF
  aq PF
gi|148266529|ref|YP_001245472.1| External link 2c SF
  2c PF
gi|150392566|ref|YP_001315241.1| External link 1i SF
  1i PF
gi|57652448|ref|YP_184989.1| External link x8 SF
  x8 PF
gi|49482347|ref|YP_039571.1| External link a0 SF
  a0 PF
gi|151220258|ref|YP_001331081.1| External link 5p SF
  5p PF
gi|156978431|ref|YP_001440690.1| External link 71 SF
  71 PF
gi|116050433|ref|YP_790748.1| External link 2t SF
  2t PF
gi|126700749|ref|YP_001089646.1| External link 3x SF
  3x PF
gi|146302679|ref|YP_001197270.1| External link 1z SF
  1z PF
gi|77459194|ref|YP_348700.1| External link pn SF
  pn PF
gi|59711681|ref|YP_204457.1| External link vf SF
  vf PF
gi|24115199|ref|NP_709709.1| External link s0 SF
  s0 PF
gi|108807613|ref|YP_651529.1| External link ys SF
  ys PF
gi|115314554|ref|YP_763277.1| External link 3z SF
  3z PF
gi|77460522|ref|YP_350029.1| External link pn SF
  pn PF
gi|126452445|ref|YP_001066184.1| External link 20 SF
  20 PF
gi|170718213|ref|YP_001785236.1| External link 7p SF
  7p PF
gi|186893745|ref|YP_001870857.1| External link 9g SF
  9g PF
gi|157369628|ref|YP_001477617.1| External link 7e SF
  7e PF
gi|91777691|ref|YP_552899.1| External link b4 SF
  b4 PF
gi|186895553|ref|YP_001872665.1| External link 9g SF
  9g PF
gi|148378624|ref|YP_001253165.1| External link 0i SF
  0i PF