DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: Homeobox domain.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
scaffold_618.4 External link nk SF
  nk PF
jgi|ChlNC64A_1|56599|estExt_fgenesh3_pg.C_10352 External link h2 SF
  h2 PF
scaffold_450.2 External link nk SF
  nk PF
ENSTRUP00000021947 External link tq SF
  tq PF
ENSTRUP00000021947 External link to SF
  to PF
scaffold_312.20 External link nk SF
  nk PF
134456 External link sj SF
  sj PF
PITG_19220 iy SF
  iy PF
85385 External link ra SF
  ra PF
jgi|Ost9901_3|89717|ost_20_007_029 External link oz SF
  oz PF
LOC_Os02g05450.1|12002.m05893|protein External link os SF
  os PF
GSVIVP00009253001 vt SF
  vt PF
Gm0025x00498 yg SF
  yg PF
jgi|OstRCC809_1|88424|eugene1.0000140158 External link o8 SF
  o8 PF
jgi|Poptr1_1|560666|eugene3.00060625 External link pt SF
  pt PF
29671.m000294 External link rk SF
  rk PF
AT4G29940.1 External link ad SF
  ad PF
jgi|Sorbi1|5054671|Sb04g003450 External link oj SF
  oj PF
IMGA|AC123547_12.1 External link mw SF
  mw PF
AT3G19510.1 External link ad SF
  ad PF
jgi|MicpuN2|63537|EuGene.1300010187 External link ij SF
  ij PF
jgi|Phypa1_1|75761|fgenesh1_pg.scaffold_55000024 External link pw SF
  pw PF
jgi|Phypa1_1|170895|estExt_fgenesh1_pg.C_2670037 External link pw SF
  pw PF
jgi|Selmo1|438630|estExt_fgenesh2_pg.C_30602 External link gj SF
  gj PF
LOC_Os06g12400.1|12006.m05957|protein External link os SF
  os PF
Gm0084x00111 yg SF
  yg PF
jgi|MicpuC2|59356 External link iq SF
  iq PF
AT3G19510.1 External link at SF
  at PF
AT4G29940.1 External link at SF
  at PF
evm.TU.supercontig_95.11 r6 SF
  r6 PF
AC209365.1_FGT025 External link ze SF
  ze PF
28152.m000873 External link rk SF
  rk PF
jgi|Poptr1_1|826053|estExt_fgenesh4_pg.C_LG_XVIII1192 External link pt SF
  pt PF
jgi|Emihu1|450965|estExtDG_Genemark1.C_350225 External link ex SF
  ex PF
FBpp0246047 External link gw SF
  gw PF
FBpp0280447 External link do SF
  do PF
jgi|Brafl1|125331|estExt_fgenesh2_pg.C_1780033 External link bf SF
  bf PF
ENSGALP00000008672 External link gh SF
  gh PF
gi|115935366|ref|XP_001186323.1| External link tu SF
  tu PF
ENSMUSP00000028003 External link mm SF
Gene name: Lmx1a  mm PF
ENSDARP00000091613 External link da SF
  da PF
ENSSTOP00000004483 External link gb SF
  gb PF
ENSMUSP00000000253 External link mh SF
Gene name: Lhx2  mh PF
FBpp0227565 External link du SF
  du PF
ENSGACP00000014357 External link gc SF
  gc PF
jgi|Lotgi1|109311|e_gw1.10.293.1 External link gy SF
  gy PF
FBpp0080712 External link de SF
  de PF
ENSPPYP00000009230 External link o5 SF
  o5 PF
ENSCSAVP00000001063 External link i0 SF
  i0 PF
ENSMMUP00000008291 External link ru SF
  ru PF