DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: Bacterial regulatory helix-turn-helix protein, lysR family.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
30231.m003682 External link rk SF
  rk PF
30163.m001373 External link rk SF
  rk PF
30229.m006304 External link rk SF
  rk PF
gi|120406707|ref|YP_956536.1| External link 28 SF
  28 PF
30224.m006219 External link rk SF
  rk PF
gi|190574542|ref|YP_001972387.1| External link 9i SF
  9i PF
gi|184158576|ref|YP_001846915.1| External link 99 SF
  99 PF
gi|110807600|ref|YP_691120.1| External link 3s SF
  3s PF
gi|182679449|ref|YP_001833595.1| External link 8q SF
  8q PF
gi|126641547|ref|YP_001084531.1| External link 1l SF
  1l PF
gi|126642109|ref|YP_001085093.1| External link 1l SF
  1l PF
gi|163857995|ref|YP_001632293.1| External link 5y SF
  5y PF
gi|187933795|ref|YP_001887515.1| External link 97 SF
  97 PF
gi|150016859|ref|YP_001309113.1| External link 03 SF
  03 PF
30230.m002664 External link rk SF
  rk PF
gi|116695368|ref|YP_840944.1| External link 2j SF
  2j PF
30227.m001809 External link rk SF
  rk PF
30173.m001133 External link rk SF
  rk PF
30083.m000436 External link rk SF
  rk PF
30087.m000622 External link rk SF
  rk PF
jgi|Poptr1_1|594749|eugene3.66150001 External link pt SF
  pt PF
gi|146276705|ref|YP_001166864.1| External link 3k SF
  3k PF
gi|124267874|ref|YP_001021878.1| External link 14 SF
  14 PF
30224.m006258 External link rk SF
  rk PF
30224.m006286 External link rk SF
  rk PF
30224.m006420 External link rk SF
  rk PF
29305.m000147 External link rk SF
  rk PF
30224.m006320 External link rk SF
  rk PF
gi|15599559|ref|NP_253053.1| External link pa SF
  pa PF
gi|170018688|ref|YP_001723642.1| External link 9d SF
  9d PF
gi|170736398|ref|YP_001777658.1| External link 7j SF
  7j PF
gi|134295664|ref|YP_001119399.1| External link 30 SF
  30 PF
gi|15829896|ref|NP_308669.1| External link eo SF
  eo PF
gi|70732138|ref|YP_261894.1| External link qf SF
  qf PF
gi|145599797|ref|YP_001163873.1| External link 5h SF
  5h PF
gi|13470511|ref|NP_102080.1| External link mk SF
  mk PF
gi|126461339|ref|YP_001042453.1| External link 21 SF
  21 PF
gi|121605767|ref|YP_983096.1| External link 01 SF
  01 PF
gi|163853804|ref|YP_001641847.1| External link 6r SF
  6r PF
gi|116694023|ref|YP_728234.1| External link 2j SF
  2j PF
gi|126463211|ref|YP_001044325.1| External link 21 SF
  21 PF
gi|33592086|ref|NP_879730.1| External link be SF
  be PF
gi|73537975|ref|YP_298342.1| External link rl SF
  rl PF
gi|116694340|ref|YP_728551.1| External link 2j SF
  2j PF
gi|28869815|ref|NP_792434.1| External link pj SF
  pj PF
gi|152994220|ref|YP_001339055.1| External link 0z SF
  0z PF
gi|188534595|ref|YP_001908392.1| External link ej SF
  ej PF
gi|170018918|ref|YP_001723872.1| External link 9d SF
  9d PF
gi|110640529|ref|YP_668257.1| External link 0m SF
  0m PF
gi|114565210|ref|YP_752724.1| External link 3w SF
  3w PF