DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: Bacterial regulatory helix-turn-helix proteins, AraC family.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|150002687|ref|YP_001297431.1| External link 0r SF
  0r PF
gi|150002960|ref|YP_001297704.1| External link 0r SF
  0r PF
gi|150006322|ref|YP_001301066.1| External link 0r SF
  0r PF
gi|150002746|ref|YP_001297490.1| External link 0r SF
  0r PF
gi|29349590|ref|NP_813093.1| External link bt SF
  bt PF
gi|29348235|ref|NP_811738.1| External link bt SF
  bt PF
gi|150002736|ref|YP_001297480.1| External link 0r SF
  0r PF
gi|150003189|ref|YP_001297933.1| External link 0r SF
  0r PF
gi|255533889|ref|YP_003094261.1| External link p5 SF
  p5 PF
gi|150003705|ref|YP_001298449.1| External link 0r SF
  0r PF
gi|29348743|ref|NP_812246.1| External link bt SF
  bt PF
gi|255532539|ref|YP_003092911.1| External link p5 SF
  p5 PF
gi|150003719|ref|YP_001298463.1| External link 0r SF
  0r PF
gi|150003574|ref|YP_001298318.1| External link 0r SF
  0r PF
gi|150009686|ref|YP_001304429.1| External link 0g SF
  0g PF
gi|29348269|ref|NP_811772.1| External link bt SF
  bt PF
gi|150002641|ref|YP_001297385.1| External link 0r SF
  0r PF
gi|150004703|ref|YP_001299447.1| External link 0r SF
  0r PF
gi|29348874|ref|NP_812377.1| External link bt SF
  bt PF
gi|255532617|ref|YP_003092989.1| External link p5 SF
  p5 PF
gi|29349519|ref|NP_813022.1| External link bt SF
  bt PF
gi|150003331|ref|YP_001298075.1| External link 0r SF
  0r PF
gi|29350081|ref|NP_813584.1| External link bt SF
  bt PF
gi|53714536|ref|YP_100528.1| External link fa SF
  fa PF
gi|60682558|ref|YP_212702.1| External link fl SF
  fl PF
gi|145222914|ref|YP_001133592.1| External link 4h SF
  4h PF
gi|41408541|ref|NP_961377.1| External link av SF
  av PF
gi|119961410|ref|YP_947406.1| External link 56 SF
  56 PF
gi|121637247|ref|YP_977470.1| External link 07 SF
  07 PF
gi|148822535|ref|YP_001287289.1| External link 51 SF
  51 PF
gi|111223687|ref|YP_714481.1| External link 1b SF
  1b PF
gi|118619152|ref|YP_907484.1| External link 5o SF
  5o PF
gi|126175007|ref|YP_001051156.1| External link 2z SF
  2z PF
gi|152981560|ref|YP_001351825.1| External link 4d SF
  4d PF
gi|117617794|ref|YP_855588.1| External link 33 SF
  33 PF
gi|119775340|ref|YP_928080.1| External link 2p SF
  2p PF
gi|120405276|ref|YP_955105.1| External link 28 SF
  28 PF
gi|147672093|ref|YP_001215063.1| External link 15 SF
  15 PF
gi|114046938|ref|YP_737488.1| External link 24 SF
  24 PF
gi|183984052|ref|YP_001852343.1| External link 8u SF
  8u PF
gi|116670068|ref|YP_831001.1| External link 1f SF
  1f PF
gi|86157397|ref|YP_464182.1| External link ae SF
  ae PF
gi|159039690|ref|YP_001538943.1| External link 61 SF
  61 PF
gi|190573454|ref|YP_001971299.1| External link 9i SF
  9i PF
gi|182434994|ref|YP_001822713.1| External link 7n SF
  7n PF
gi|114563877|ref|YP_751391.1| External link 3w SF
  3w PF
gi|15608457|ref|NP_215833.1| External link mb SF
  mb PF
gi|170736452|ref|YP_001777712.1| External link 7j SF
  7j PF
gi|108760264|ref|YP_630831.1| External link m1 SF
  m1 PF
gi|118463714|ref|YP_880773.1| External link 59 SF
  59 PF