DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Binding category: DBD. Domain search: SRF-type transcription factor (DNA-binding and dimerisation domain).

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
AC206395.1_FGT022 External link ze SF
  ze PF
evm.TU.supercontig_30.148 r6 SF
  r6 PF
AC185218.4_FGT004 External link ze SF
  ze PF
GSVIVP00006101001 vt SF
  vt PF
AC185426.2_FGT021 External link ze SF
  ze PF
AC185218.4_FGT003 External link ze SF
  ze PF
evm.TU.supercontig_265.5 r6 SF
  r6 PF
GSVIVP00019739001 vt SF
  vt PF
jgi|Sorbi1|5055926|Sb04g033930 External link oj SF
  oj PF
LOC_Os11g12360.1|12011.m05428|protein External link os SF
  os PF
GSVIVP00011492001 vt SF
  vt PF
jgi|Triat1|82096|fgenesh1_pm.C_scaffold_11000062 External link wt SF
  wt PF
ENSGACP00000005559 External link g1 SF
  g1 PF
AC211189.1_FGT001 External link ze SF
  ze PF
ENSTRUP00000044937 External link to SF
  to PF
AT1G77080.2 External link at SF
  at PF
ENSMMUP00000021949 External link r2 SF
  r2 PF
jgi|Sorbi1|5031637|Sb10g019790 External link oj SF
  oj PF
GSVIVP00010651001 vt SF
  vt PF
Gm0122x00031 yg SF
  yg PF
evm.TU.contig_46342.1 r6 SF
  r6 PF
W10D5.1 External link cn SF
Gene name: CE25156  cn PF
AC192246.2_FGT012 External link ze SF
  ze PF
AC211500.1_FGT007 External link ze SF
  ze PF
evm.TU.contig_38604.1 r6 SF
  r6 PF
jgi|Phypa1_1|140819|e_gw1.171.4.1 External link pw SF
  pw PF
AT1G65330.1 External link at SF
  at PF
evm.TU.supercontig_185.9 r6 SF
  r6 PF
IMGA|AC144731_5.1 External link mw SF
  mw PF
ENSMMUP00000023816 External link ru SF
  ru PF
evm.TU.supercontig_18.166 r6 SF
  r6 PF
LOC_Os01g67890.1|12001.m12893|protein External link os SF
  os PF
AT4G09960.1 External link at SF
  at PF
ENSDARP00000088203 External link df SF
  df PF
AT1G60880.1 External link at SF
  at PF
jgi|Pospl1|38388|gw1.56.159.1 External link ia SF
  ia PF
Afu6g02110 External link ao SF
  ao PF
PGTG_17193 p4 SF
  p4 PF
W10D5.1 External link ce SF
Gene name: CE25156  ce PF
evm.TU.contig_38884.2 r6 SF
  r6 PF
BC1G_01388 b7 SF
  b7 PF
AT5G37415.1 External link at SF
  at PF
LOC_Os07g01820.2|12007.m29040|protein External link os SF
  os PF
LOC_Os04g52410.1|12004.m10135|protein External link os SF
  os PF
GSVIVP00021254001 vt SF
  vt PF
AT2G22540.1 External link at SF
  at PF
IMGA|CR931728_14.1 External link mw SF
  mw PF
AT5G27960.1 External link ad SF
  ad PF
ENSOGAP00000010050 External link ob SF
  ob PF
GSVIVP00002394001 vt SF
  vt PF