DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Binding category: DBD. Domain search: Bacterial regulatory proteins, gntR family.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
gi|29375939|ref|NP_815093.1| External link ef SF
  ef PF
gi|46907807|ref|YP_014196.1| External link la SF
  la PF
gi|116873005|ref|YP_849786.1| External link 2g SF
  2g PF
gi|169829570|ref|YP_001699728.1| External link 7z SF
  7z PF
gi|16803616|ref|NP_465101.1| External link lm SF
  lm PF
gi|16800679|ref|NP_470947.1| External link li SF
  li PF
gi|73662371|ref|YP_301152.1| External link zt SF
  zt PF
gi|157149931|ref|YP_001450678.1| External link 6s SF
  6s PF
gi|118443077|ref|YP_877370.1| External link 12 SF
  12 PF
gi|81427997|ref|YP_394996.1| External link ls SF
  ls PF
gi|121609669|ref|YP_997476.1| External link 4b SF
  4b PF
27582.m000062 External link rk SF
  rk PF
gi|187735130|ref|YP_001877242.1| External link 9a SF
  9a PF
gi|117618129|ref|YP_858062.1| External link 33 SF
  33 PF
gi|146302549|ref|YP_001197140.1| External link 1z SF
  1z PF
27668.m000050 External link rk SF
  rk PF
gi|19704794|ref|NP_604356.1| External link fn SF
  fn PF
gi|172056054|ref|YP_001812514.1| External link 7r SF
  7r PF
gi|29833294|ref|NP_827928.1| External link s9 SF
  s9 PF
gi|154685048|ref|YP_001420209.1| External link 2o SF
  2o PF
gi|146318216|ref|YP_001197928.1| External link 4r SF
  4r PF
gi|26987227|ref|NP_742652.1| External link ps SF
  ps PF
gi|15889149|ref|NP_354830.1| External link au SF
  au PF
gi|24379396|ref|NP_721351.1| External link s6 SF
  s6 PF
gi|126700973|ref|YP_001089870.1| External link 3x SF
  3x PF
gi|16077425|ref|NP_388238.1| External link bs SF
Gene name: ycxD  bs PF
32230.m000024 External link rk SF
  rk PF
30224.m006315 External link rk SF
  rk PF
30224.m006372 External link rk SF
  rk PF
gi|15840208|ref|NP_335245.1| External link mu SF
  mu PF
ACYPI21186-PA External link qp SF
  qp PF
gi|83590525|ref|YP_430534.1| External link m8 SF
  m8 PF
gi|153955416|ref|YP_001396181.1| External link 16 SF
  16 PF
gi|29377124|ref|NP_816278.1| External link ef SF
  ef PF
gi|153934508|ref|YP_001386470.1| External link 2u SF
  2u PF
gi|126698986|ref|YP_001087883.1| External link 3x SF
  3x PF
gi|170757380|ref|YP_001780161.1| External link 8f SF
  8f PF
gi|18311287|ref|NP_563221.1| External link cu SF
  cu PF
gi|153940134|ref|YP_001389879.1| External link 5c SF
  5c PF
gi|170758783|ref|YP_001785862.1| External link 8s SF
  8s PF
gi|148378516|ref|YP_001253057.1| External link 0i SF
  0i PF
gi|110800256|ref|YP_696979.1| External link 2f SF
  2f PF
gi|153931367|ref|YP_001382904.1| External link 3t SF
  3t PF
gi|187933279|ref|YP_001887114.1| External link 97 SF
  97 PF
gi|18310347|ref|NP_562281.1| External link cu SF
  cu PF
gi|110802731|ref|YP_698681.1| External link 5n SF
  5n PF
gi|160878277|ref|YP_001557245.1| External link 5z SF
  5z PF
gi|167039845|ref|YP_001662830.1| External link 8d SF
  8d PF
gi|118444886|ref|YP_878804.1| External link 12 SF
  12 PF
gi|150017720|ref|YP_001309974.1| External link 03 SF
  03 PF