DBD: Transcription factor prediction database

Release 2.0
Sequence ID search:
Binding category: DBD. Domain search: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.

Details Genome DB Domain architecture
gi|113968782|ref|YP_732575.1| External link 0f SF No hits
  0f PF
gi|153948104|ref|YP_001402803.1| External link 06 SF No hits
  06 PF
gi|70733281|ref|YP_263055.1| External link qf SF No hits
  qf PF
gi|153002428|ref|YP_001368109.1| External link 1a SF No hits
  1a PF
gi|170022002|ref|YP_001726956.1| External link 9d SF No hits
  9d PF
gi|15640357|ref|NP_229984.1| External link vc SF No hits
  vc PF
gi|15804586|ref|NP_290627.1| External link e1 SF No hits
  e1 PF
gi|28899694|ref|NP_799299.1| External link vp SF No hits
  vp PF
gi|114561668|ref|YP_749181.1| External link 3w SF No hits
  3w PF
gi|16762292|ref|NP_457909.1| External link ty SF No hits
  ty PF
gi|59713011|ref|YP_205787.1| External link vf SF No hits
  vf PF
gi|119773527|ref|YP_926267.1| External link 2p SF No hits
  2p PF
gi|120553406|ref|YP_957757.1| External link 1n SF No hits
  1n PF
gi|194443698|ref|YP_002043413.1| External link 8y SF No hits
  8y PF
gi|147675408|ref|YP_001218598.1| External link 15 SF No hits
  15 PF
gi|157157700|ref|YP_001465489.1| External link 6l SF No hits
  6l PF
gi|170022606|ref|YP_001719111.1| External link 8r SF No hits
  8r PF
gi|16123874|ref|NP_407187.1| External link yp SF No hits
  yp PF
gi|161617304|ref|YP_001591269.1| External link 78 SF No hits
  78 PF
gi|157368534|ref|YP_001476523.1| External link 7e SF No hits
  7e PF
gi|194736012|ref|YP_002117066.1| External link d8 SF No hits
  d8 PF
gi|108809601|ref|YP_653517.1| External link ys SF No hits
  ys PF
gi|192362153|ref|YP_001980686.1| External link 9m SF No hits
  9m PF
gi|74314489|ref|YP_312908.1| External link on SF No hits
  on PF
gi|160877148|ref|YP_001556464.1| External link 7a SF No hits
  7a PF
gi|145300513|ref|YP_001143354.1| External link 44 SF No hits
  44 PF
gi|162419315|ref|YP_001605061.1| External link 6m SF No hits
  6m PF
gi|15600448|ref|NP_253942.1| External link pa SF No hits
  pa PF
gi|104779452|ref|YP_605950.1| External link pq SF No hits
  pq PF
gi|170681786|ref|YP_001746379.1| External link 8k SF No hits
  8k PF
gi|119946830|ref|YP_944510.1| External link 0x SF No hits
  0x PF
gi|29143780|ref|NP_807122.1| External link es SF No hits
  es PF
gi|187730310|ref|YP_001882681.1| External link ez SF No hits
  ez PF
gi|89110043|ref|AP_003823.1| External link ew SF No hits
  ew PF
gi|127514351|ref|YP_001095548.1| External link 1r SF No hits
  1r PF
gi|146305326|ref|YP_001185791.1| External link 4y SF No hits
  4y PF
gi|37681340|ref|NP_935949.1| External link vb SF No hits
  vb PF
gi|24115279|ref|NP_709789.1| External link s0 SF No hits
  s0 PF
gi|56415991|ref|YP_153066.1| External link x0 SF No hits
  x0 PF
gi|194447604|ref|YP_002048150.1| External link 9r SF No hits
  9r PF
gi|152972857|ref|YP_001338003.1| External link 2k SF No hits
  2k PF
gi|156935802|ref|YP_001439718.1| External link 69 SF No hits
  69 PF
gi|114049078|ref|YP_739628.1| External link 24 SF No hits
  24 PF
gi|156972583|ref|YP_001443490.1| External link 65 SF No hits
  65 PF
gi|82778829|ref|YP_405178.1| External link d1 SF No hits
  d1 PF
gi|82546337|ref|YP_410284.1| External link sq SF No hits
  sq PF
gi|188532329|ref|YP_001906126.1| External link ej SF No hits
  ej PF
gi|167031234|ref|YP_001666465.1| External link 7g SF No hits
  7g PF
gi|152986094|ref|YP_001351317.1| External link 4j SF No hits
  4j PF
gi|117918891|ref|YP_868083.1| External link 41 SF No hits
  41 PF