DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Binding category: DBD. Domain search: ZIM motif.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
29596.m000719 External link rk SF
  rk PF
jgi|Sorbi1|5048383|Sb01g011840 External link oj SF
  oj PF
LOC_Os06g48534.1|12006.m91852|protein External link os SF
  os PF
jgi|Selmo1|177195|estExt_Genewise1Plus.C_380364 External link gj SF
  gj PF
LOC_Os02g05510.2|12002.m33554|protein External link os SF
  os PF
jgi|Phypa1_1|232610|fgenesh2_pm.scaffold_111000001 External link pw SF
  pw PF
evm.TU.supercontig_155.28 r6 SF
  r6 PF
GSVIVP00001889001 vt SF
  vt PF
jgi|Poptr1_1|577294|eugene3.00170036 External link pt SF
  pt PF
GSVIVP00015084001 vt SF
  vt PF
Gm0036x00233 yg SF
  yg PF
Gm0026x00205 yg SF
  yg PF
jgi|Poptr1_1|558987|eugene3.00050602 External link pt SF
  pt PF
AP006358_1.1 External link jp SF
  jp PF
jgi|Poptr1_1|562360|eugene3.00070298 External link pt SF
  pt PF
AT1G51600.1 External link ad SF
  ad PF
GSVIVP00001890001 vt SF
  vt PF
jgi|Poptr1_1|562361|eugene3.00070299 External link pt SF
  pt PF
AT1G51600.1 External link at SF
  at PF
29596.m000720 External link rk SF
  rk PF
29838.m001724 External link rk SF
  rk PF
jgi|Poptr1_1|833910|estExt_fgenesh4_pm.C_LG_X0958 External link pt SF
  pt PF
jgi|Selmo1|409922|fgenesh2_pg.C_scaffold_11000305 External link gj SF
  gj PF
AC196462.3_FGT020 External link ze SF
  ze PF
AT1G51600.2 External link at SF
  at PF
jgi|Phypa1_1|57561|fgenesh1_pm.scaffold_69000012 External link pw SF
  pw PF
AT4G24470.2 External link at SF
  at PF
LOC_Os03g47970.1|12003.m78812|protein External link os SF
  os PF
AT3G21175.1 External link at SF
  at PF
Gm0069x00185 yg SF
  yg PF
AT4G24470.1 External link ad SF
  ad PF
LOC_Os02g05510.1|12002.m05899|protein External link os SF
  os PF
jgi|Sorbi1|5028344|Sb01g008950 External link oj SF
  oj PF
LOC_Os03g52450.1|12003.m101486|protein External link os SF
  os PF
jgi|Phypa1_1|16797|gw1.68.123.1 External link pw SF
  pw PF
AT3G21175.1 External link ad SF
  ad PF
AT4G24470.1 External link at SF
  at PF
LOC_Os02g05510.3|12002.m33553|protein External link os SF
  os PF
jgi|Poptr1_1|551709|eugene3.00021024 External link pt SF
  pt PF
AT3G21175.2 External link at SF
  at PF
LOC_Os03g47970.2|12003.m78883|protein External link os SF
  os PF
GSVIVP00029575001 vt SF
  vt PF
jgi|Phypa1_1|145290|e_gw1.226.30.1 External link pw SF
  pw PF
AC183913.4_FGT042 External link ze SF
  ze PF
AC194294.2_FGT020 External link ze SF
  ze PF
AC192210.2_FGT003 External link ze SF
  ze PF
AC192210.2_FGT002 External link ze SF
  ze PF
AT4G32570.1 External link ad SF No hits
  ad PF
AC211750.1_FGT009 External link ze SF No hits
  ze PF
GSVIVP00034049001 vt SF No hits
  vt PF