DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Binding category: DBD. Domain search: LSD1 zinc finger.

Each predicted transcription factor is displayed with its SUPERFAMILY (SF) as well as PFAM (PF) architecture.
The domain architectures are represented as colored rectangles and oblongs on a black line corresponding to the polypeptide chain.
The oblongs represent DNA-binding domains, and the rectangles represent domains with other functions.
The numbers inside the SF rectangles represent the SF database identifier for that protein superfamily, and are linked to a description.
The PFAM identifiers inside the boxes are also linked to descriptions of the family.
All the domains belonging to one family have the same colored rectangle.
Colors are reused for different families, so that two different families can be represented by the same color.

The full repertoire of transcription factors may be distributed across several pages of results.
These can be accessed by clicking on the individual page numbers, or downloading the entire set of results from the Download section.


 
Details Genome DB Domain architecture
Gm0117x00003.2 yg SF
  yg PF
LOC_Os03g27210.1|12003.m08050|protein External link os SF
  os PF
jgi|Poptr1_1|423073|gw1.XII.1533.1 External link pt SF
  pt PF
jgi|Poptr1_1|280009|gw1.232.87.1 External link pt SF
  pt PF
Gm0119x00251 yg SF
  yg PF
jgi|Poptr1_1|422909|gw1.XII.1369.1 External link pt SF
  pt PF
Gm0117x00003.1 yg SF
  yg PF
jgi|Selmo1|104974|e_gw1.30.214.1 External link gj SF
  gj PF
AT1G02170.1 External link at SF
  at PF
jgi|Poptr1_1|570400|eugene3.00121053 External link pt SF
  pt PF
GSVIVP00014156001 vt SF
  vt PF
evm.TU.supercontig_52.79 r6 SF
  r6 PF
AT1G02170.1 External link ad SF
  ad PF
jgi|Poptr1_1|588185|eugene3.02320028 External link pt SF
  pt PF
jgi|Poptr1_1|781331|fgenesh4_pg.C_scaffold_40000081 External link pt SF
  pt PF
GSVIVP00014158001 vt SF
  vt PF
AP006426_10.1 External link jp SF
  jp PF
jgi|Phypa1_1|127529|e_gw1.65.89.1 External link pw SF
  pw PF
30147.m014365 External link rk SF
  rk PF
evm.TU.supercontig_13.214 r6 SF
  r6 PF
29709.m001191 External link rk SF
  rk PF
jgi|Monbr1|32666|estExt_fgenesh2_pg.C_120125 External link ov SF
  ov PF
jgi|Poptr1_1|588186|eugene3.02320029 External link pt SF
  pt PF
jgi|Poptr1_1|279981|gw1.232.59.1 External link pt SF
  pt PF
jgi|Sorbi1|5029839|Sb01g033600 External link oj SF
  oj PF
jgi|Sorbi1|5049043|Sb01g028720 External link oj SF
  oj PF
LOC_Os07g28910.1|12007.m07162|protein External link os SF No hits
  os PF
jgi|OstRCC809_1|44930|estExt_Genewise1Plus.C_21108 External link o8 SF No hits
  o8 PF
AT1G32540.1 External link at SF No hits
  at PF
Tc00.1047053511245.120 External link uz SF No hits
  uz PF
AT4G20380.2 External link at SF No hits
  at PF
jgi|Poptr1_1|423881|gw1.29.393.1 External link pt SF No hits
  pt PF
jgi|Selmo1|72709|gw1.9.1185.1 External link gj SF No hits
  gj PF
evm.TU.supercontig_71.68 r6 SF No hits
  r6 PF
Gm0003x00627 yg SF No hits
  yg PF
AC206985.1_FGT028 External link ze SF No hits
  ze PF
LOC_Os12g41700.1|12012.m07951|protein External link os SF No hits
  os PF
jgi|Poptr1_1|555804|eugene3.00040517 External link pt SF No hits
  pt PF
Gm0022x00261 yg SF No hits
  yg PF
Gm0160x00034.1 yg SF No hits
  yg PF
LbrM31_V2.1550 External link ib SF No hits
  ib PF
Tc00.1047053509007.14 External link uz SF No hits
  uz PF
29851.m002411 External link rk SF No hits
  rk PF
Gm0191x00026 yg SF No hits
  yg PF
LOC_Os08g03610.1|12008.m04505|protein External link os SF No hits
  os PF
29668.m000320 External link rk SF No hits
  rk PF
AT4G25110.1 External link at SF No hits
  at PF
jgi|Ost9901_3|29103|eugene.0100010497 External link oz SF No hits
  oz PF
AC191522.3_FGT004 External link ze SF No hits
  ze PF
LOC_Os08g06280.5|12008.m26467|protein External link os SF No hits
  os PF