DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Genome: Ostreococcus sp. RCC809 Sequence ID: jgi|OstRCC809_1|41293|fgenesh1_pm.C_scaffold_5000029
Details Genome DB Domain architecture
External link o8 SF
  o8 PF
SUPERFAMILY (SF) domains
Family name Family Regions Evalue
Homeodomain-like 46689 1-64 7.01e-14
Homeodomain-like 46689 56-104 6.14e-08
Pfam (PF) domains
Family name Family Regions Evalue
Myb-like DNA-binding domain Myb_DNA-binding 7-53 2e-10
Myb-like DNA-binding domain Myb_DNA-binding 59-103 3.5e-09

Similar transcription factor domain architectures

The domain architectures on these pages may take several minutes to generate. Please be patient.

Predicted transcription factors with similar SUPERFAMILY domain combinations.
Pfam domain architecture does not contain a sequence specific DNA-binding domain.

DNA-binding domain taxonomic distribution

Links to external data on the distribution of DBDs across the tree of life.

Distribution of Homeodomain-like DBDs throughout the major taxonomic superkingdoms and kingdoms.
No PFAM sequence specific DNA-binding domains.

Sequence
MRIQIKGGVWKNTEDEILKAAVMKYGKNQWPRISSLLNRKSAKQCKARWYEWLDPSIKKTEWTREEDEKL
LHLAKLMPTQWRTIAPVVGRTPSQCLTRYEKLLDAACAKDDEYDAADDPRRLRPGEIDPNPETKPAKPDA
VDMAEDEKEMLAEARARLGTRRGRRRRERRGRNSSKRRGDWRNCKRRESSRRRASRTCVERNRFVGLITT
PEMRFERKPTRLCNDTREEDEAYAKAQSSKVFKPVTVAELEGKKSAKQIDEESKKRELARQKMHERRDMP
GAVEQALKVNDASFTRRSKLMLPTPQVSNQELEEIAKMGKAGLGLLDDGSATPSSALLESYAPTPATSSG
IAARTPLRTPQVEGDAILREAQAQAAHRNQKSTLFGGGDKAAATMPTDFAGATPSRAKTAATPSHSGVSS
QMGATPLLHGQTPIRDGLNINDQYAAHFEDLSTRERRAQTAATASSLKSAFMSLPKPQNEYQIDLPDAPV
EDERMEDAFVEDEADVRAREAAQLAEYQAMQMRKRSQAVQRDLPRPVELKPLEPLAEDEVSKLVNQEASM
LLEHDIAKYGKKPKSAAALEDFDESYIESARKLIETEADEMLREQKTSREDFTDAFVAALADERKKLIFV
PSLNAQISVDDATKDQRLEAAKATFDRVRGDMEKDAKQAAKLEQKCSLLTAGLQKRNGELCKKLKKTVEE
IKSLATEAASYTILHVQEQRAAPNRIEYWLDLIQTARAREQKLQQKFETLSRQVNAASA