DBD: Transcription factor prediction database

Release 2.0
www.transcriptionfactor.org
Sequence ID search:
Genome: Ostreococcus sp. RCC809 Sequence ID: jgi|OstRCC809_1|91870|eugene1.0000040016
Details Genome DB Domain architecture
External link o8 SF
  o8 PF
SUPERFAMILY (SF) domains
Family name Family Regions Evalue
Nucleic acid-binding proteins 50249 266-326 2.88e-05
Pfam (PF) domains
Family name Family Regions Evalue
'Cold-shock' DNA-binding domain CSD 263-328 1.8e-05

Similar transcription factor domain architectures

The domain architectures on these pages may take several minutes to generate. Please be patient.

Predicted transcription factors with similar SUPERFAMILY domain combinations.
Predicted transcription factors with similar Pfam domain combinations.

DNA-binding domain taxonomic distribution

Links to external data on the distribution of DBDs across the tree of life.

Distribution of Nucleic acid-binding proteins DBDs throughout the major taxonomic superkingdoms and kingdoms.
Distribution of 'Cold-shock' DNA-binding domain DBDs throughout the species in UniProt.

Sequence
MASFSRRNDEPTRRAPNATSRPVAEGEREYGRIVTLKESFGFIRCGARLEIGGGARSRGGPPREAQVFFH
ASEFHRELPNRDKPALDPGDLVKFIVAPSPKGDGQMNAFDVQKCDASELQVRVEREGVLGVVSRTLRGKM
KRDAYGGKIKYDGTNVAEDTDAALETDAKESDEGSANAPDESDVDVDSMKDELDFSGADLADACRLSKLK
QCTKVKFTLSFDPYSRAMRATDVCEAFPQAKEQGDRTGVDGDDWNREKVAVEEEFGVISVIKSGYGFIKC
CSRAKDLFFHFSELNEDASTARTGQEVQFRVITEPRTDKIVASGVRFAPKGSAVFETIDERPVRGICRAK
LLFSTKGFPSRDGERSVPKGMVEETTGRDERKQYGFDRHGLLDARQNPREGELVQFCVRTDKRMQVESAC
KVQIMRFTGKVTSIKSDGLYGFVEHVDQGTGESGKAFVHGAEIEGQSRLNVGDELEYSLQVGRKDEEFAA
KRVKVVVAAPVDPNAPVSRPGSPRMNRDNQFSGSQFKITKGPDGTRGFSMGRGNGLAEKAAAMLSTLTTS
AEAFVPLGPSNTSSKASLVDADAVEIDERAVQDA